By Niranjan Nagarajan, Mihai Pop (auth.), David Fenyö (eds.)
Computational biology is an interdisciplinary box that applies mathematical, statistical, and machine technological know-how easy methods to solution organic questions, and its value has in basic terms elevated with the advent of high-throughput suggestions similar to automated DNA sequencing, complete expression research with microarrays, and proteome research with smooth mass spectrometry. In Computational Biology, professional practitioners current a large survey of computational biology equipment by way of concentrating on their functions, together with basic series research, protein constitution elucidation, transcriptomics and proteomics information research, and exploration of protein interplay networks. As a quantity within the hugely profitable tools in Molecular Biology™ sequence, this paintings offers the type of precise description and implementation recommendation that's an important for buying optimum effects. Authoritative and straightforward to exploit, Computational Biology is a perfect consultant for all scientists attracted to quantitative biology.
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Extra resources for Computational Biology
Covarion Models Covarion Models can be considered as the CFG equivalent of profile Hidden Markov Models (29–31). While profile-HMMs RNA Structure Prediction 31 describe the profile of a multiple sequence alignment of protein sequences, Covarion Models describe the profile of a multiple sequence alignment of RNA sequences that belong to a fold family. They cannot generate arbitrary secondary structures, and they are specific to the common structure of the RNA sequences in the multiple alignment.
If we connect the 5¢ end of an RNA sequence with its 3¢ end, then we would get a loop, and this would correlate with the null loop. As per a precise mathematical definition, a null loop contains those single-stranded nucleic acids that do not separate any base pair and the nucleic acids which are base-paired but are not nested into other base pairs. Stacking loop. This loop is formed by the hydrogen bonds of two consecutive base pairs in a helix and the sugar–phosphate backbone between the nucleic acids of the two pairs.
B-Actin, GAPDH and others). However, there is a serious concern about the assumption of invariant expression of the so-called housekeeping genes as they are often affected by various factors that are not controlled in the experiment. Also, those genes are usually highly expressed, thus not representing genes of low intensities. Furthermore, they are usually a very small subset of the whole array chip, so fluctuations in their intensities are highly affected by random or systematic errors. Any normalization based on such a limited number of internal references would be unreliable.